21. GENOME RESOURCES For RAT genome resources for RAT. We are proud to provide the first genomic resources tothe research community of rat genome (see Nature Genetics, May 1999 issue). http://ratmap.hgc.jp/menu/Genome.html

GENOME RESOURCES for RAT Our international collaborative effort has been providing the useful genomic resources of the rat. It is also a fruit of the successful collaboration between industrial and academic research groups. Otsuka GEN Research Institute, Otsuka Pharmaceutical Co. Ltd (JPN), Department of Genetics, University of Cambridge (UK), Wellcome Trust Centre for Human Genetics, University of Oxford (UK), Research Genetics Inc (USA), and Institute of Medical Science, University of Tokyo (JPN) have been working together to accelerate the genomic researches of the rat. We are proud to provide the first genomic resources to the research community of rat genome (see Nature Genetics , May 1999 issue). RH Framework Map The graphical RH framework map. Comprehensive information of each markers are cross-referenced. RH Microsatellite Mar ker Map (Got Map) The graphical RH comprehensive map of Got G en ot suka ) microsatellite markers. We have isolated more than 8,000 independent microsatellite sequences. Of them over 3,000 novel Got markers are mapped. More precise information is available through the links. The data is integrated into the framework, mainly consisting of

22. Major Resources - NCBI Zebrafish Genome Resources Page NCBI Zebrafish genome resources Page. The National Center for Biotechnology Information(NCBI) has recently developed a zebrafish genome resources page. http://www.nih.gov/science/models/zebrafish/resources/genome_resources_desc.html

NCBI Zebrafish Genome Resources Page The National Center for Biotechnology Information (NCBI) has recently developed a zebrafish genome resources page. This homepage will bring together information on diverse zebrafish-related resources from multiple centers: sequence, mapping and clone information as well as pointers to strain and mutant resources: http://www.ncbi.nlm.nih.gov/genome/guide/D_rerio.html In collaboration with ZFIN, a LocusLink page http://www.ncbi.nlm.nih.gov/LocusLink/ was developed to include the display of the name of strains from which zebrafish sequence was derived. LocusLink provides a single query interface to curated sequence and descriptive information about genetic loci. It presents information on official nomenclature, aliases, sequence accessions, phenotypes, EC numbers, MIM numbers, UniGene clusters, map information, and related web sites. The current scope for LocusLink is human, mouse, rat, and zebrafish. For the latest statistics of the number of loci, please visit http://www.ncbi.nlm.nih.gov/LocusLink/statistics.html

23. Major Resources - NCBI Zebrafish Genome Resources Page 2000. Sequencing started in February 2001 by using a mixture of shotgunfrom BAC libraries and whole genome shotgun from plasmids. http://www.nih.gov/science/models/zebrafish/resources/zebrafish_sequencing.html

The Zebrafish (Danio rerio) Sequencing Project The project is based upon a collaboration between the Sanger Centre and the international zebrafish community as announced during the Sanger Centre Zebrafish Workshop 2000 . Sequencing started in February 2001 by using a mixture of shotgun from BAC libraries and whole genome shotgun from plasmids. The data can be searched using the Centre’s BLAST server or downloaded via the FTP-site and will also be deposited regularly in the trace depository . Primary genomic sequence analysis including annotation will proceed through the Sanger Centre pipeline. The long term repository for curated annotation will be the zebrafish database ZFIN . The Sanger Centre will also consider requests from the zebrafish community to sequence specific BAC or PAC contigs. This project is funded by the Wellcome Trust Additional information about this project can be obtained from this website: http://www.sanger.ac.uk/Projects/D_rerio/

24. Human Genome Resources Information Technology and Communication AcademicComputing Health Sciences. Human genome resources. http://hsc.virginia.edu/achs/molbio/software/Human_Genome_resources.html

Information Technology and Communication - Academic Computing Health Sciences Human Genome Resources The following pages are meant to provide a resource of web-sites, applications and general information for people wishing to use Human Genome data in their research. please click here to continue... Please send comments/suggestions/questions to Michael Black June 26, 2000: Quoted from the DOE's Joint Genome Institute web page jump to "The sixteen institutions that form the Human Genome Sequencing Consortium include...:" International Human Genome Sequencing Consortium Announces "Working Draft" of Human Genome The Human Genome Project public consortium today announced that it has assembled a working draft of the sequence of the human genome the genetic blueprint for a human being. This major milestone involved two tasks: placing large fragments of DNA in the proper order to cover all of the human chromosomes, and determining the DNA sequence of these fragments. The assembly reported today consists of overlapping fragments covering 97 percent of the human genome, of which sequence has already been assembled for approximately 85 percent of the genome. The sequence has been threaded together into a string of As, Ts, Cs, and Gs arrayed along the length of the human chromosomes.

25. Using NCBI Human Genome Resources Using NCBI Human genome resources Donna Maglott, NCBI Track Bioinformatics TutorialsDate Monday, January 28 Time 130pm 500pm Location Canyon III http://conferences.oreillynet.com/cs/bio2002/view/e_sess/2216

All of oreilly.com Books Conferences Home Registration Speakers Keynotes ... Mail List Practical Tools For Innovation O'Reilly Bioinformatics Technology Conference January 28-31, 2002 Tucson, AZ Tutorial Using NCBI Human Genome Resources Donna Maglott , NCBI Track: Bioinformatics Tutorials Date: Monday, January 28 Time: Location:  Canyon III NCBI provides an up to date, comprehensive resource of human genome data, including assembled sequence contigs that are ordered across the chromosome, and linked in multiple ways to cytogenetic, genetic, and physical maps. This includes the standard cytogenetic ideogram, FISH mapped clones, STS maps, several different genetic recombination maps, several RH maps, cytogenetic maps of genes and diseases, as well as transcripts, UniGene clusters, and predicted genes on the contiged assembly. NCBI provides interactive web tools for specific queries, but also the ability to download subsets of correlated data from any region of the chromosome specified in any of the coordinate systems (cytogenetic, base pair, cM, cR, etc). In addition, the full data set is updated regularly and available for bulk ftp. This tutorial is a detailed discussion of the data, how it is constructed, and examples of how to use it to ask biological and biomedical questions of the human genome. oreilly.com Home

26. Tilapia Genome Resources Tilapia genome resources. Tilapia (Oreochromis spp.) are a group of perchlikefishes (Family Cichlidae) native to the freshwaters of tropical Africa. http://hcgs.unh.edu/BAC/tilapia/

Hubbard Center for Genome Studies Linking Genomics to Organisms and the Environment Home Staff Facilities Seminars ... Press Tilapia Genome Resources Tilapia ( Oreochromis spp. ) are a group of perch-like fishes (Family Cichlidae) native to the freshwaters of tropical Africa. They are one of the most important aquatic species in culture today, with world-wide production exceeding 1 billion pounds per year. We are working with collaborators around the world to construct genetic maps which will facilitate selective breeding for traits of commercial importance. Linkage maps Our first linkage map was constructed from haploid embyros of O. niloticus (Kocher et al., 1998). This map can be viewed on the ArkDb viewer of the Roslin Institute. A second, more extensive map based on the F2 of an interspecific cross between O. niloticus and O. aureus is being prepared for publication (Lee et al. in prep), and is available on this www site. BAC Libraries Four tilapia BAC libraries have been produced at the Tokyo University of Fisheries (Katagiri et al. 2002)

27. National Center For Genome Resources National Center for genome resources. Oct29-2002 NEW STORY The NationalCenter for genome resources Releases Version 2.0 Of PathDB http://www.prnewswire.com/gh/cnoc/comp/128456.html

National Center for Genome Resources Oct-29-2002 NEW STORY The National Center for Genome Resources Releases Version 2.0 Of PathDB(TM) Software Oct-3-2002 The National Center for Genome Resources Receives NSF, 'Functional Genomics of Phytophthora-Plant Interactions,' Grant Award Jul-24-2002 The National Center for Genome Resources Receives DOE 'Genomes to Life' Grant Award May-29-2002 The National Center for Genome Resources Appoints Geert Wenes, Ph.D., As Program Leader of Bioinformatics Nov-9-2001 Miguel Rios, Jr., Ph.D. Elected Chairman of the NCGR Board of Directors Nov-9-2001 Miguel Rios, Jr., Ph.D. Elected Chairman of the NCGR Board of Directors Issuers of news releases and not PR Newswire are solely responsible for the accuracy of the content. A United Business Media company.

28. 8/4/98 - NATIONAL CENTER FOR GENOME RESOURCES SELECTS SUN HPC 10000 SERVER FOR C Press Releases. NATIONAL CENTER FOR genome resources SELECTS SUN HPC10000 SERVER FOR CONSOLIDATION OF BIOINFORMATICS DATABASES. Sun http://www.sun.com/smi/Press/sunflash/9808/sunflash.980804.2.html

sun.com How To Buy My Sun Worldwide Sites ... Press Releases NATIONAL CENTER FOR GENOME RESOURCES SELECTS SUN HPC 10000 SERVER FOR CONSOLIDATION OF BIOINFORMATICS DATABASES Sun HPC 10000 Server Facilitates Computationally Intensive Genetic Analysis Programs PALO ALTO, CAAugust 4, 1998 The non-profit NCGR is one of two public repositories for human genomic data in the United States. The center facilitates the storage, annotation, access, visualization and analysis of biological data gathered from scientists mapping and sequencing the genetic makeup of humans (the Human Genome Project), plants, other animals, microbes and other organisms. Analysis of this data leads to a better understanding of genetics as well as to practical applications in medicine, agriculture and other fields. "NCGR is constantly seeking to develop and acquire better computational tools for our genomic databases to better serve the research community," President and CEO Robert E. Dunkle said. "Acquisition of the Sun HPC 10000 server represents a leap forward for NCGR because it enables us to make extensive use of new database server technology. With this level of computing power, we have positioned NCGR to meet the increased demands for our services for the foreseeable future." The greater computing power and high availability offered by the new Sun HPC 10000 server augments NCGR's ability to provide useful data to the worldwide research community. Internal and external users will be able to analyze genetic data sets, such as the Genome Sequence DataBase, using various software programs developed by NCGR and elsewhere. Internally developed applications include MAR-Finder, a gene sequence analysis tool used to identify DNA regions involved in attachment to the nuclear matrix, and the soon-to-be-released Sequence Viewer, a

29. Arizona Health Sciences Library Eresources : Human Genome Resources Restrictions None. Subjects Genetics,Genomics. Issues . Provider NCBI.Format HTML, Paper subscriptions None. Getting Help AHSLweb (520) 626-6125. http://www.ahsl.arizona.edu/databases/gateway.cfm?name=Human Genome Resources

30. Genome Resources The Genome Database; Human Genome Project Information; National Human Genome ResearchInstitute; National Center for genome resources. Last Updated 01/30/2003. http://www.library.jhu.edu/findit/subjects/biology/genome.html

Home Find It Subject Guides Biology Human Genome Info The Genome Database Human Genome Project Information National Human Genome Research Institute National Center for Genome Resources Last Updated 01/30/2003 Milton S. Eisenhower Library Albert D. Hutzler Reading Room ("the HUT") John Work Garrett Library George Peabody Library © The Sheridan Libraries 2002

31. Genome Resources The Genome Database; Human Genome Project Information; National Human Genome ResearchInstitute; National Center for genome resources. Last Updated 02/12/2002. http://www.library.jhu.edu/findit/subjects/biophysics/genome.html

Home Find It Subject Guides Biophysics Biophysics Human Genome Info Guides to Research by Subject: Biology Sources for Finding Human Genome Information The Genome Database Human Genome Project Information National Human Genome Research Institute National Center for Genome Resources Last Updated 02/12/2002 Milton S. Eisenhower Library Albert D. Hutzler Reading Room ("the HUT") John Work Garrett Library George Peabody Library © The Sheridan Libraries 2002

32. Bioafrica - Mycobacterium Tuberculosis (TB) Genome Resources . Mycobacterium Tuberculosis genome resources * NCBI Mycobacteriumtuberculosis Genome resource. * Sanger Center Mycobacterium http://www.bioafrica.net/TBresources1.html

Mycobacterium Tuberculosis Genome Resources: NCBI Mycobacterium tuberculosis Genome resource. Sanger Center Mycobacterium tuberculosis resource: TubercuList World-Wide Web Server at Pasteur Institute. Bioinformatics Tools for Mycobacterium: M. Tuberculosis Blast Search at BioAfrica . M. Tuberculosis Complete Genome Blast at SANBI. M. Tuberculosis Complete Genome Blast at Sanger Institute. Retrieve annotation for a M. tuberculosis gene at Sanger Institute Enter the gene designation here [ e.g. Note that the trailing "c" should be included, where necessary. If your search produces no results, try adding a trailing "c" Literature Search: An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae. Philipp WJ et al. Free Full Paper Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Brosch R et al Free Full Paper Search PubMed The BioAfrica web site is maintained by: Tulio de Oliveira, email: toliveira@mrc.ac.za Bioinformatics Unit at Africa Centre

33. Untitled Document Index Introduction Biological Databases Human genome resources HomologySearching Multiple Sequence Alignments . Human genome resources, http://www.tcd.ie/Genetics/staff/Miguel_DeArce_Bioinf_01/bioinformatics_01/htm/h

Bioinformatics 01 Bioinformatics Tools on the Web Index Introduction Biological Databases Homology Searching Human Genome Resources GoldenPath contains a working draft of the human genome, 90% complete. About 2/3 of the sequence is in highly accurate 'finished' state, the rest is only in 'draft'form. Having two windows opened (see introduction), start by clicking on the GoldenPath link above. From the light blue band on the left of the new page, select the December 2001 browser. Most of the following notes have been cut and pasted from the GoldenPath webpages for your convenience. 1.1. Navigating Goldenpath (the human genome) by using the 'position' window. 1.In the window named 'position ' enter ' ' or any other number (as long as it is between 1 and 22) and press ' submit '. What is the size in nucleotides of chromosome 15, or the chromosome of your choice? All that sequence is now available to you to explore. 2.In the

34. PGRC Home Founded in 1997, the Plant genome resources Center (PGRC) represents a scientificand technological platform for plant genome analysis in barley (Hordeum http://pgrc.ipk-gatersleben.de/

P lant G enome R esources C enter PGRC Home Modules Research Databases ... Biolinks Webmaster: scholz@ipk-gatersleben.de Founded in 1997, the Plant Genome Resources Center (PGRC) represents a scientific and technological platform for plant genome analysis in barley (Hordeum vulgare) and other crop species. A central unit offers services for automated DNA sequencing and high throughput arraying, developes bioinformatic tools and provides user support in the field of bioinformatics. Complementary to the service core five modules provide expertise and resources in specific target areas. In addition to the establishment of external research collaborations with partners from both the private and the public sector interdepartmental research projects are linked via the PGRC. Most activities of the PGRC are now located in the new genome center that was inaugurated in September 2000. Coordinator: Dr. Patrick Schweizer Tel. +49 (0) 39482-5660 Fax: +49 (0) 39482-5595 email: schweiz@ipk-gatersleben.de

35. PAG-X: INTEGRATED GENOME RESOURCES AT NCBI. Poster Bioinformatics for Microbial Genomics Computer Demo Only. INTEGRATEDgenome resources AT NCBI. Tatiana A. Tatusova 1 1 NCBI/NLM/NIH Bldg. http://www.intl-pag.org/10/abstracts/PAGX_P797.html

January 12-16, 2002 San Diego, CA Poster: Bioinformatics for Microbial Genomics Computer: Demo Only INTEGRATED GENOME RESOURCES AT NCBI. Tatiana A. Tatusova NCBI/NLM/NIH Bldg. 38A 8600 Rockville Pike, Bethesda, MD 20894 Return to Previous Page or Intl-PAG Homepage

36. PAG-VI WWW GENOME RESOURCES Town Country Hotel, San Diego, CA, January 1822, 1998. W108. WWW genome resources.GEORGE S. MICHAELS George Mason University, MSN 5C3, Fairfax, Va. http://www.intl-pag.org/6/abstracts/michaels.html

WWW GENOME RESOURCES GEORGE S. MICHAELS George Mason University, MSN 5C3, Fairfax, Va. 22030-4444 The internet has become an important tool for most scientific research domains. With current trends in providing genome research data centered on locally curated databases, it will become increasingly important to know how to navigate internet and find relevant data resources. This workshop will cover a variety of tools and databases available on the World Wide Web ( WWW ) for genome research. Return to Previous Page or Intl-PAG Homepage

37. Human Genome Resources Human genome resources. Restrictions, Available to members of the Arizona HealthInformation Network. Subjects, Genetics Genomics. Provider, NCBI. Format, HTML. http://www.azhin.org/databases/dbs_gateway.cfm?name=Human Genome Resources&sourc

38. Genome Resources Human Genome Project. Resources for Education and Exploration. Human GenomeProject Educational resources. A Primer on Molecular Genetics. http://www.millerandlevine.com/genome-resources.html

Human Genome Project Resources for Education and Exploration Exploring our Molecular Selves (a genome project education kit) Genetic Education Cente r (University of Kansas) National Human Genome Research Center (at NIH) Human Genome Project Information (at Department of Energy) Human Genome Project Educational resources A Primer on Molecular Genetics Modern Genetics for all Students (from Washington Univ.) Blazing a Genetic Trail (from the Hughes Foundation) The DNA Learning Center (Cold Spring Harbor Lab) DNA from the Beginning (an animated scientific tour) DNA "Chips" (a detailed DNA lab guide for teachers) The Genome News Network (from the Institute for Genomic Research) These resources, from a wide variety of educational institutions and laboratories, provide material that may be useful in the science classroom and laboratory. We particulary recommend "Exploring our Molecular Selves" an education kit that can be ordered from the web (The molecular graphic shown above is taken from this web site)

39. Genome Education Resources Laboratory. MendelWeb. National Center for genome resources. Primeron Molecular Genetics by the Department of Energy. Virtual FlyLab http://www.lbl.gov/Education/Genome/more-genome-resources.html

Where to Get Additional Information about Genome Education Access Excellence at Genentech " Diving into the Gene Pool " at the Exploratorium Genetics Education Center at the University of Kansas Medical Center GenLink at Washington University GenScope Hereditary Hearing Impairment Resource Registery (HHIRR) Human Genome Center at the Lawrence Berkeley National Laboratory Human Genome Center at the Lawrence Livermore National Laboratory Human Genome Center at Stanford University Life Sciences Division at the Los Alamos National Laboratory MendelWeb National Center for Genome Resources " Primer on Molecular Genetics " by the Department of Energy Virtual FlyLab by California State University, Los Angeles Note: The web links provided in this section are not necessarily endorsed by LBNL and do not necessarily reflect the official positions of the lab on this topic. Additional resources can be found in LBNL's Ethical, Legal, and Social Issues in Science project Return to GenEd Home Page

40. National Center For Genome Resources Provides 'MAR-Finder,' A Gene Sequence Anal National Center for genome resources Provides 'MARFinder,' a Gene SequenceAnalysis Tool. A new computer-based gene sequence analysis http://genome.gsc.riken.go.jp/hgmis/archive/articles/marfind.htm

National Center for Genome Resources Provides 'MAR-Finder,' a Gene Sequence Analysis Tool A new computer-based gene sequence analysis tool used to identify DNA regions involved in attachment to the nuclear matrix has been created by a researcher with the National Center for Genome Resources. The tool, called MAR-Finder, is available through the center's Web site at [NCGR URL not available; see http://www.futuresoft.org/MAR-Wiz/ MAR-Finder is among several new Web-based tools developed by the scientific staff at the center to analyze gene sequences or to improve access to the sequences and valuable annotation in NCGR's Genome Sequence DataBase. Scientists in academia and private industry use the database and bioinformatics services provided by NCGR to conduct leading-edge research in genetics, medicine and functional genomics. MAR-Finder, developed by senior computational scientist Gautam B. Singh, uses statistical inference to deduce the presence of matrix association regions, or MARs, in DNA sequences. MARs constitute a significant functional block within sequences and facilitate differential gene expression and DNA replication. MAR-Finder is ideal for researchers interested in DNA structure and identification of genes within a sequence. "MAR-Finder is a valuable tool and its development was a nice meld between a dry and wet lab. You can detect a matrix association region with the computer and test your prediction at the bench that same day," Krawetz said. "And appreciation for the role of MARs in controlling the expression of our genome is growing."

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