Geometry.Net - Science: Saccharomyces

Saccharomyces Genome Database
Commonly known as baker's or budding yeast. Includes sequence analysis and tools, maps, literature, Category Science Biology Eukaryotic Fungal saccharomyces SGD TM is a scientific database of the molecular biology and genetics of the yeastsaccharomyces cerevisiae, which is commonly known as baker's or budding yeast
http://genome-www.stanford.edu/Saccharomyces/

Extractions: New and Noteworthy Hardware upgrade at SGD SGD has upgraded to a new computer. This transition should be transparent; however, as always, if you find any problems, please let us know by sending mail to yeast-curator@genome.stanford.edu . (Posted March 20, 2003) Literature curation news Earn a "Superbud" T-shirt This is your chance to get one of the "Superbud" T-shirts modeled by SGD at last summer's Yeast Genetics and Molecular Biology Meeting in Madison, Wisconsin. During the next 4 months, SGD will award "Superbud" T-shirts to 100 researchers (25/month) who contribute community annotations to our site. Recipients will be selected randomly from each month's contingent of "Community Annotators" and will be posted on our homepage (limit 1 shirt/researcher). To see an excellent example of Community Annotation, Look at the
Saccharomyces Bayanus
Two SEM micrographs of cells of this yeast, with a brief discussion of yeast biology.
http://distans.livstek.lth.se:2080/S_bayan.htm

Extractions: As yeasts, i.e. microorganisms which ferment sugar and convert it into ethanol and carbon dioxide, Saccharomyces bayanus is used in winemaking. A long list of yeasts may be found in the National Collection of Yeast Cultures. Saccharomyces bayanus has several synonyms such as Saccharomyces abuliensis, Saccharomyces globosus, Saccharomyces heterogenicus, etc. Saccharomyces bayanus (Lalvin EC-1118) are yeasts ideal to make some special, particularly sparkling, wines. S. bayanus inhibit wild yeasts, restart stuck fermentations, and are tolerant to alcohol concentrations up to 18%. Other specific yeast strains are for red quality wines. If there is an art to winemaking, then it is the art of controlling yeast . There are thousands of types of yeast - of those only 250 will produce fermentation, and only 24 of those are "good" yeasts. Various terms used in enology, including "yeast ecology" are listed in a glossary. More links to brewing: An ongoing site with articles and links on brewing as it applies to the Middle Ages. Medieval Brewers Home Page.
Stanford Genomic Resources
Provides links to various systematic analysis projects, resources, laboratories, and departments at Category Science Biology Genetics Eukaryotic It is maintained by the saccharomyces Genome Database within the School ofMedicine. Database Resources. SGD, saccharomyces Genome Database.
http://genome-www.stanford.edu/
YeastDeletionWebPages
Dear Colleagues, Happy New Year and welcome to the saccharomyces GenomeDeletion Project web page. The purpose of this page is to
http://www-sequence.stanford.edu/group/yeast_deletion_project/deletions3.html

Extractions: Happy New Year and welcome to the Saccharomyces Genome Deletion Project web page. The purpose of this page is to communicate protocols, methods and information about the project. Please let us know what information you would like to see included or suggest useful links. Project Overview The Saccharomyces Genome Project has revealed the presence of more than 6000 open reading frames (ORFs) in the S. cerevisiae genome. Approximately one third of these ORFs currently have no known function four years after their discovery. The goal of the Saccharomyces Genome Deletion Project is to generate as complete a set as possible of yeast deletion strains with the overall goal of assigning function to the ORFs through phenotypic analysis of the mutants. The method used was a PCR-based gene deletion strategy to generate a start- to stop- codon deletion of each of the ORFs in the yeast genome. As part of the deletion process, each gene disruption was replaced with a KanMX module and uniquely tagged with one or two 20mer sequence(s) . The presence of the tags can be detected via hybridization to a high-density oligonucleotide array, enabling growth phenotypes of individual strains to be analyzed in parallel .
CYGD
Contains a vast amount of information on the saccharomyces cerevisiae (brewer's yeast) genome including sequences and search tools.
http://www.mips.biochem.mpg.de/proj/yeast
Saccharomyces Cerevisiae
Microscopic image of bread yeast.
http://www.dipbot.unict.it/sistematica/Saccharom.html
SCPD
SCPD The Promoter Database of saccharomyces cerevisiae. Genes Explorethe promoter regions of ~6000 genes and ORFs in yeast genome
http://cgsigma.cshl.org/jian/
Arlen Johnson Lab: Home Page
A member of the Institute for Cellular and Molecular Biology. Research concerns mRNA degradation as a mechanism of translational control in the yeast saccharomyces cerevisiae.
http://www.utexas.edu/research/rnadecay/
Yeast Sequencing
Center (formerly known as Stanford DNA Sequencing and Technology Center) has finishedsequencing on the budding yeast saccharomyces cerevisiae, chromosomes IV
http://www-sequence.stanford.edu/group/yeast/

Extractions: The Stanford Genome Technology Center (formerly known as Stanford DNA Sequencing and Technology Center) has finished sequencing on the budding yeast Saccharomyces cerevisiae, chromosomes IV (right arm only), V, and portions of XVI. The completed sequences of chromosomes IV, V and XVI are available from GenBank. Home Technology Development Functional Analysis Informatics ... wwwadmin@sequence.stanford.edu
The World-Wide Web Virtual Library: Yeast
Cell biology, biochemistry and genetics of the yeast species saccharomyces cerevisiae and Schizosaccharomyces pombe, with links to resources and databases.
http://genome-www.stanford.edu/Saccharomyces/VL-yeast.html

Extractions: Yeast ( Budding Fission , and Candida World-Wide Web Virtual Library Biosciences Resources for educators Genetics Education Network. Tom Manney's (Kansas State University) yeast experiments for undergrads and high school students. A well-done and informative web site for yeast in the classroom. Research Link 2000.
Yeast
Articles on all aspects of saccharomyces and other yeast genera.
http://www.interscience.wiley.com/jpages/0749-503X/

Extractions: Yeast is a journal published for the international community of yeast researchers. It contains original articles, major and minor reviews and short communications on all aspects of Saccharomyces and other yeast genera. Electronic material associated with the journal can be viewed by clicking on Other Resources. Online ISSN: 1097-0061
GeneQuiz - Analysis Of Saccharomyces Cerevisiae Genome
saccharomyces cerevisiae. Compiled at EMBLEBI, Jan 1997. In the ensuing8000 years, saccharomyces cerevisiae played a central role
http://www.sander.ebi.ac.uk/genequiz/genomes/sc/

Extractions: Compiled at EMBL-EBI, Jan 1997. In the ensuing 8000 years, Saccharomyces cerevisiae played a central role in food production and conservation thanks to its ability to ferment glucose to ethanol and carbon-dioxide. But not only being useful in daily brewers and bakers practice, yeast, as a simple, unicellular eukaryote developed to a unique powerful model system for biological research. Its prominent useful features are the cheap and easy cultivation, short generation times, the detailed genetic and biochemical knowledge accumulated in many years of research and the ease of the application of molecular techniques for its genetic manipulation. Therefore, this fungus provides a highly suitable system to study basic biological processes that are relevant for many other higher eukaryotes including man. More info from NCBI Genome length: 12.06 Mb Reference:
Jean Beggs Lab Home Page
Research focused on premRNA splicing in the yeast saccharomyces cerevisiae, in particular the proteinprotein and protein-RNA interactions within the spliceosome at the University of Edinburgh, UK.
http://www.ed.ac.uk/~jeanb/

Extractions: We are studying pre-mRNA splicing in the yeast Saccharomyces cerevisiae . Pre-mRNA splicing takes place in a very large RNA-protein complex, the spliceosome, within which there are subparticles, the small ribonucleoprotein particles (snRNPs: U1, U2,U4, U5 and U6), each composed of a small nuclear RNA (snRNA) and a set of proteins. During spliceosome assembly and during the course of the splicing reactions many dynamic RNA-RNA interactions occur and are apparently regulated by proteins. Proteins also regulate the specificity, accuracy and efficiency of the splicing process. We are investigating molecular interactions in the spliceosome and identifying novel splicing factors, using both biochemical and genetic approaches, including in vitro splicing assays, UV crosslinking, two-hybrid screens and, more recently, microarray analysis. For more information on pre-mRNA splicing, try The Yeast Nucleus by P. Fantes and J. Beggs, published by Oxford Univerity Press. Choose A Project Lsm Proteins Microarrays This site is a member of the RNA webring
GeneQuiz - Analysis Of Saccharomyces Cerevisiae Genome
saccharomyces cerevisiae. Compiled at EMBLEBI, Oct 1997. Functional informationclock. How much is known about the proteins encoded in this genome?
http://www.sander.ebi.ac.uk/genequiz/genomes/sc9709/

Extractions: Compiled at EMBL-EBI, Oct 1997. How much is known about the proteins encoded in this genome? Click on the clock to see the tabulated numbers. The clock is organized in terms of increasing information content (clockwise, starting from 12 o'clock). Key: Note, the term "protein sequence" includes both expressed proteins and those amino acid sequences inferred from predicted open reading frames (ORFs). by protein identifier - specify a particular protein or ORF, e.g., by functional class - specify one of several functional classes, e.g., transport by reliability - specify the reliability of functional assignment, e.g.
The South Side (of Lake Union, That Is) Homey Page
Study the position effect that occurs near telomeres in the yeast, saccharomyces cerevisiae. Includes a list of protocols, abstracts of papers from our lab, and a collection of links.
http://www.fhcrc.org/labs/gottschling/

Extractions: Gottschling Lab Home Page Y ou have found the home page of Dan Gottschling's laboratory at the Fred Hutchinson Cancer Research Center in Seattle, WA. Within our little cubbyhole of cyberspace, we hope you will find useful resources for studying our organism of choice, Saccharomyces cerevisiae . We have included a list of protocols used in our lab, the Gottschling lab roster, abstracts of papers from our lab, and a collection of indispensible (and not so indispensible) links for molecular biology research. We welcome your suggestions, questions, and gripes. Thanks for visiting us. Prepared By:
Yeast Labs Page
sequences (2 to 4fold shotgun coverage) of five saccharomyces species (click here for a phlyogenetic tree of these
http://genome-www.stanford.edu/Saccharomyces/yeastlabs.html

Extractions: Quick Search: Site Map Help Full Search Home ... Contact SGD The Yeast Labs Page is a list of laboratories working on yeast around the world. Yeast colleagues are invited to enter their colleague information into SGD using the Colleague Submission/Update Form . The page displays contact information, links to web pages, gene names and keywords as provided by yeast colleagues. A list of hyperlinks to Saccharomyces cerevisiae laboratories was created and maintained by Ramon Tabtiang in the Herskowitz lab until February 1998. SGD has now accepted responsibility of updating this page. We have recently made significant changes to this page and comments are welcomed through yeast-curator@genome.stanford.edu Please use the Colleague Submission/Update Form to update your colleague information in SGD. More links can be found at Regional Yeast Groups and Other Organism Labs Search by topic: Researcher Institution City, State or Country
Book On Yeast
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http://www.cshl.org/books/mcboty_saccharomyces.html
Saccharomyces Cerevisiae
saccharomyces cerevisiae. The MIPS Comprehensive Yeast Genome Database aims topresent information on the genomic structure of saccharomyces cerevisiae.
http://www.mips.biochem.mpg.de/projects/fungi/yeast.html

Extractions: mips Projects Fungi Plants Structural genomics Annotation Expression analysis ... One of the milestones of genome research was the determination of the sequence of the whole genome of the well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae . Goal of this project was the sequencing of the entire nuclear genome of the commonly used laboratory strain S288C. The project started in 1989 and finished in spring 1996. More than 100 laboratories from Europe, USA, Canada and Japan took part of the joined effort.
Site Name
Prominent organisms. FTP site. Other Databases SGD MIPS YPD. saccharomyces cerevisiaecomplete genome. 100, 300, 500, 700, 900, 1100, 1300, 1500, 1700, 1900, I, 230,203.
http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/4932.html

Extractions: YPD I II III IV ... XVI This collection of Saccharomyces cerevisiae complete chromosome sequences and annotations is a part of the NCBI Reference Sequence (RefSeq) project that provides curated sequence data and related information for the community to use as a standard. The nucleotide and protein sequences, and all other annotations, are provided by the Saccharomyces Genome Database (SGD) and will be revised as SGD is updated. Questions or Comments?
Entrez Genome View
Related Databases SGD saccharomyces Genome Database MIPS - The Yeast GenomeYeast Proteome Database PomBase. saccharomyces cerevisiae genome view.
http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?chr=scerevisiae.inf

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